spades github | GitHub - ablab/spades: SPAdes Genome Assembler

Keyword	CPC	PCC	Volume	Score	Length of keyword
spades github	1.13	0.3	2406	39	13
spades	0.65	0.9	3968	95	6
github	0.64	0.1	1618	84	6

Keyword	CPC	PCC	Volume	Score
spades github	0.16	0.9	8940	61
spades github discussions	1.96	0.9	4166	91
learn from spades code examples on github	0.31	0.3	5751	59
contribute to spades development on github	0.32	0.5	2320	85
ace of spades github	1.91	0.9	2799	50
spades assembler github	1.21	0.6	1586	11
spades genome github	1.42	0.4	8296	32

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GitHub - ablab/spades: SPAdes Genome Assembler
github.com

https://github.com/ablab/spades

WEBSPAdes is an assembler for second-generation sequencing data (Illumina or IonTorrent). PacBio and Nanopore reads are supported only as supplementary data. SPAdes can assemble genomes, metagenomes, transcriptomes, viral genomes etc. Download SPAdes binaries for Linux or MacOS here.

DA: 59 PA: 39 MOZ Rank: 38

Releases · ablab/spades · GitHub
github.com

https://github.com/ablab/spades/releases

WEBDescription. cloudSPAdes is a module of the SPAdes assembler aimed at genome assembly from the data generated using Synthetic Long Read (SLR) technologies, such as 10X Genomics Chromium or UST TELL-Seq. Availability. cloudSPAdes will be available soon as a part of SPAdes package.

DA: 62 PA: 63 MOZ Rank: 49

Quick start - SPAdes Assembly Toolkit - ablab.github.io
github.io

https://ablab.github.io/spades/getting-started.html

WEBQuick start. SPAdes is an assembler for second-generation sequencing data (Illumina or IonTorrent). PacBio and Nanopore reads are supported only as supplementary data. SPAdes can assemble genomes, metagenomes, transcriptomes, viral genomes etc. Download SPAdes binaries for Linux or MacOS.

DA: 22 PA: 50 MOZ Rank: 25

SpaDES - Develop and Run Spatially Explicit Discrete Event …
predictiveecology.org

https://spades.predictiveecology.org/

WEBSpatial Discrete Event Simulation (SpaDES) Develop and run spatially explicit discrete event simulation models. Metapackage for implementing a variety of event-based models, with a focus on spatially explicit models. These include raster-based, event-based, and agent-based models.

DA: 18 PA: 1 MOZ Rank: 42

SPAdes Assembly Toolkit - ablab.github.io
github.io

https://ablab.github.io/spades/index.html

WEBSPAdes - St. Petersburg genome assembler - is an assembly toolkit containing various assembly pipelines. This manual will help you to install and run SPAdes. SPAdes version 3.15.5 was released under GPLv2 on July 14th, 2022 and can be downloaded from https://github.com/ablab/spades.

DA: 55 PA: 88 MOZ Rank: 37

SPAdes release how to · ablab/spades Wiki · GitHub
github.com

https://github.com/ablab/spades/wiki/SPAdes-release-how-to

WEBFeb 9, 2022 · Star 658. SPAdes release how to. Andrey Prjibelski edited this page on Feb 9, 2022 · 4 revisions. Pre-release checks. Check whether all new options and changes are well documented in assembler/README.md, including links, dates and version. Set proper version in assembler/VERSION. Set proper version in src/cmake/pack.cmake.

DA: 98 PA: 95 MOZ Rank: 43

Genome assembly with Spades - ABRPI-Training - GitHub Pages
github.io

http://sepsis-omics.github.io/tutorials/modules/spades/

WEBAssembly using Spades. Keywords: de novo assembly, Spades, Galaxy, Microbial Genomics Virtual Lab. Background. Spades is one of a number of de novo assemblers that use short read sets as input (e.g. Illumina Reads), and the assembly method is based on de Bruijn graphs. For information about Spades see this link. Learning objectives

DA: 60 PA: 40 MOZ Rank: 39

Issues · ablab/spades · GitHub
github.com

https://github.com/ablab/spades/issues/

WEBIssues · ablab/spades · GitHub. ablab / spades Public. Notifications. Fork 131. Star 658. 850 Closed. Author. Label. Projects. Milestones. Assignee. Sort. == Error == finished …

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GitHub - NVlabs/SPADE: Semantic Image Synthesis with SPADE
github.com

https://github.com/NVlabs/SPADE

WEBGitHub - NVlabs/SPADE: Semantic Image Synthesis with SPADE. NVlabs / SPADE Public. Notifications. Fork 983. Star 7.5k. master. README. License. Semantic Image Synthesis with SPADE. New implementation available at imaginaire repository. We have a reimplementation of the SPADE method that is more performant. It is avaiable at … spades

spades

DA: 96 PA: 17 MOZ Rank: 55

spades · GitHub Topics · GitHub
github.com

https://github.com/topics/spades

WEBMar 6, 2024 · spades. Here are 17 public repositories matching this topic... Language: All. Sort: Most stars. fmalmeida / MpGAP. Star 51. Code. Issues. Pull requests. Discussions. Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads.

DA: 91 PA: 86 MOZ Rank: 8