fgsea | Easy Gene Set Enrichment Analysis in R with fgsea()

Keyword	CPC	PCC	Volume	Score	Length of keyword
fgsea	0.16	0.4	4093	43	5

Keyword	CPC	PCC	Volume	Score
fgsea	0.55	1	6089	4
fgsea package	1.94	0.5	4775	8
fgsea tutorial	0.95	0.7	4424	82
fgseamultilevel	1.74	0.6	7303	41
fgsea bioconductor	0.65	0.8	9265	13
fgsea seurat	1.68	0.2	2172	26
gsea package	1.76	0.8	8290	90
fgsea r package	1.79	0.8	3089	80

Search Results related to fgsea on Search Engine

Easy Gene Set Enrichment Analysis in R with fgsea()
biostatsquid.com

https://biostatsquid.com/fgsea-tutorial-gsea/

WEBJan 31, 2024 · What do I need to run fgsea? Essentially, there are two things you need to perform preranked gene set enrichment analysis with fgsea. The fgsea package takes in two main arguments. The first one is pathways: a list of gene sets or pathways to check. The second one is stats: a named vector of our genes of interest we want to …

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Bioconductor - fgsea
bioconductor.org

https://bioconductor.org/packages/release/bioc/html/fgsea.html

WEBfgsea. Fast Gene Set Enrichment Analysis. DOI: 10.18129/B9.bioc.fgsea. Bioconductor version: Release (3.18) The package implements an algorithm for fast gene set enrichment analysis.

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GitHub - ctlab/fgsea: Fast Gene Set Enrichment Analysis
github.com

https://github.com/ctlab/fgsea

WEBfgsea is an R-package for fast preranked gene set enrichment analysis (GSEA). This package allows to quickly and accurately calculate arbitrarily low GSEA P-values for a collection of gene sets. P-value estimation is based on an adaptive multi-level split Monte-Carlo scheme. See the preprint for algorithmic details.

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Gene Set Enrichment Analysis (GSEA) with fgsea - easy R tutorial
youtube.com

https://m.youtube.com/watch?v=itaZcIXZAwg

WEBSep 10, 2023 · 3.04K subscribers. Subscribed. 46. Share. 2.9K views 4 months ago R tutorials. In this tutorial, I will explain how to perform gene set enrichment analysis on your differential gene expression...

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Using the fast preranked gene set enrichment analysis (fgsea) package
davetang.org

https://davetang.org/muse/2018/01/10/using-fast-preranked-gene-set-enrichment-analysis-fgsea-package/

WEBJan 10, 2018 · The fgsea package allows one to conduct a pre-ranked GSEA in R, which is one approach in a GSEA. A p-value is estimated by permuting the genes in a gene set, which leads to randomly assigned gene sets of the same size.

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DESeq results to pathways in 60 Seconds with the fgsea package
github.io

https://stephenturner.github.io/deseq-to-fgsea/

WEBLearn how to quickly convert DESeq results to pathways with the fgsea package, a fast and flexible tool for GSEA on ranked gene lists.

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Using fgsea package - Bioconductor
bioconductor.org

https://bioconductor.org/packages/release/bioc/vignettes/fgsea/inst/doc/fgsea-tutorial.html

WEBfgsea is an R-package for fast preranked gene set enrichment analysis (GSEA). This package allows to quickly and accurately calculate arbitrarily low GSEA P-values for a collection of gene sets. P-value estimation is based on an adaptive multi-level split Monte-Carlo scheme. See the preprint for algorithmic details. Loading necessary libraries.

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fgsea: Fast Gene Set Enrichment Analysis - Bioconductor
bioconductor.org

https://bioconductor.org/packages/release/bioc/manuals/fgsea/man/fgsea.pdf

WEBTitle Fast Gene Set Enrichment Analysis Version 1.28.0 Description The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.

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fgsea: vignettes/fgsea-tutorial.Rmd - R Package Documentation
rdrr.io

https://rdrr.io/bioc/fgsea/f/vignettes/fgsea-tutorial.Rmd

WEBNov 8, 2020 · fgsea is an R-package for fast preranked gene set enrichment analysis (GSEA). This package allows to quickly and accurately calculate arbitrarily low GSEA P-values for a collection of gene sets. P-value estimation is based on an adaptive multi-level split Monte-Carlo scheme. See the preprint for …

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Fast gene set enrichment analysis | bioRxiv
biorxiv.org

https://www.biorxiv.org/content/10.1101/060012v2

WEBOct 22, 2019 · Preranked gene set enrichment analysis (GSEA) is a widely used method for interpretation of gene expression data in terms of biological processes. Here we present FGSEA method that is able to estimate arbitrarily low GSEA P-values with a higher accuracy and much faster compared to other implementations.

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